Publications

Select Publications

Srivastava, D., Nandi, S., Dey, M. (2019) Mechanistic and Structural Insights into Cysteine-Mediated Inhibition of Pyruvate Kinase Muscle Isoform 2. Biochemistry, 58(35):3669-3682. DOI:10.1021/acs.biochem.9b00349.

Dey, M., Brummet, A. E. (2018). Isolation and Assays of Bacterial Dimethylsulfoniopropionate Lyases. Methods in Enzymology, 605, 291-323. DOI: 10.1016/bs.mie.2018.02.020.

Srivastava, D., Razzaghi, M., Henzl, M. T., Dey, M. (2017) Structural Investigation of a Dimeric Variant of Pyruvate Kinase Muscle Isoform 2. Biochemistry, 56(50):6517-6520. DOI: 10.1021/acs.biochem.7b01013.

Schnicker, N.J., Razzhaghi, M., Guha Thakurta S., Chakravarthy, S., Dey, M. (2017) Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu. Biochemistry, 56(43):5771-5785.DOI: 10.1021/acs.biochem.7b00601.

Schnicker, N. J., De Silva, S. M., Todd, J. D., & Dey, M. (2017). Structural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-bound DddK from the Prolific Marine Bacterium Pelagibacter. Biochemistry, 56(23):2873-2885. DOI: 10.1021/acs.biochem.7b00099.

Brummett, A. E., & Dey, M. (2016). New Mechanistic Insight from Substrate-and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ. Biochemistry, 55(44), 6162-6174. DOI: 10.1021/acs.biochem.6b00585.

Schnicker, N.J., Dey, M. (2016) Bacillus anthracis Prolyl 4-Hydroxylase Modifies Collagen-like Substrates in Asymmetric Patterns. J.Biol.Chem., 291(25):13360-74. DOI: 10.1074/jbc.M116.725432.

Schnicker, N.J. & Dey, M. (2016) Structural analysis of cofactor binding for a prolyl 4-hydroxylase from the pathogenic bacterium Bacillus anthracis. Acta Cryst. D72,  675-681. DOI:10.1107/S2059798316004198.

Brummett A. E., Schnicker N. J., Crider A., Todd J. D., Dey M. (2015) Biochemical, Kinetic, and Spectroscopic Characterization of Ruegeria pomeroyi DddW—A Mononuclear Iron-Dependent DMSP Lyase. PLOS ONE, DOI:10.1371/journal.pone.0127288.

Bewley, K., Dey, M., Bjork, R. E., Mitra, S., Chobot, S., Drennan, C. L., Elliott, S. J. (2015) Rheostat re-wired: alternate hypotheses for the control of thioredoxin reduction potentials. PLOS ONE, 10(4):e0122466. DOI: 10.1371/journal.pone.0122466.

Chang W-C, Dey M., Liu P, Mansoorabadi SO, Moon S, Zhao ZK, Drennan CL, Liu H-W. (2013) Mechanistic studies of an unprecedented enzyme-catalysed 1,2-phosphono-migration reaction. Nature 496, 114–118.

Yun, D., Dey, M., Higgins, L. J., Yan, F., Liu, H-W, Drennan, C. L. (2011) Structural Insights into the mechanism of Regioselectivity of Hydroxypropylphosphonic Acid Epoxidase. J. Am. Chem.Soc.,133 (29), 11262-9.

Cedervall, P. E., Dey, M., Li, X., Sarangi, R., Hedman, B., Ragsdale, S. W., Wilmot, C. M. (2011) Structural analysis of a Ni-methyl species in methyl-coenzyme M reductase from Methanothemobacter marburgensis. J. Am. Chem. Soc., 133(15), 5626-8. (Faculty of 1000 pick).

Dey, M., Li, X., Kunz, R.C., Ragsdale, S. W. (2010) Organometallic and Radical Intermediates in the Catalytic Mechanism of Methyl-Coenzyme M Reductase using the natural substrate methyl-coenzyme M and a Coenzyme B substrate analog. Biochemistry, 28, 49 (51), 10902-11.

Cedervall, P. E.*, Dey, M.*, Pearson, A. R., Ragsdale, S. W., Wilmot, C. M. (2010) Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues. Biochemistry, 49(35), 7683-93.

Dey, M., Kunz, R. C., Lyons, D. M. Ragsdale, S. W. (2007) Characterization of alkyl-nickel adducts generated by reaction of methyl-coenzyme m reductase with brominated acids. Biochemistry 46 (42), 11969-78.

Dey, M., Telser, J., Kunz, R. C., Lees, N. S., Ragsdale, S. W., Hoffman, B. M. (2007) Biochemical and spectroscopic studies of the electronic structure and reactivity of a methyl-Ni species formed on methyl-coenzyme M reductase.” J. Am. Chem. Soc. 129 (36), 11030-2 (Faculty of 1000 Pick).

Dey, M., Rao, C. P., Guionneau, P. (2005) Structural characterization and reactivity of Cu(II) complex of p-tert-butyl-calix[4]arene bearing two imine pendants at lower rim. Inorg. Chem. Commun. 8 (11) 998-1001

Book Chapters
Dey, M. (2017). Enzymology of Microbial Dimethylsulfoniopropionate Catabolism. In Advances in protein chemistry and structural biology (Vol. 109, pp. 195-222). Academic Press. DOI: 10.1016/bs.apcsb.2017.05.00.

Dey, M., Li, X., Zhou, Y., Ragsdale, S. W. (2010) Evidence for Organometallic Intermediates in Bacterial Methane Formation Involving the Nickel Coenzyme F430. Met Ions Life Sci. 7, 71-110.
Rao, C. P. Dey, M. (2004) Calixarenes. Encyclopedia of Nanoscience and Nanotechnology vol.1, 475-497 (23).